Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM40_2872Zinc carboxypeptidase family protein. (384 aa)    
Predicted Functional Partners:
DM40_2873
Hypothetical protein; Belongs to the UPF0246 family.
 
     0.745
aruF
arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit.
  
     0.517
astA
arg_catab_AstA: arginine N-succinyltransferase.
  
     0.490
DM40_2874
Toxin-antitoxin system toxin component, PIN family.
       0.469
DM40_74
Hypothetical protein.
  
     0.425
DM40_2875
cys/Met metabolism PLP-dependent enzyme family protein.
  
    0.403
DM40_2849
Hypothetical protein.
  
     0.401
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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