STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_289Glutathione-dependent formaldehyde-activating enzyme family protein. (61 aa)    
Predicted Functional Partners:
DM40_290
Bacterial regulatory s, gntR family protein.
       0.714
DM40_2993
3-demethylubiquinone-9 3-methyltransferase family protein.
 
    0.600
DM40_5771
adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase.
    
 0.573
DM40_3258
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
     0.533
DM40_5672
PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family protein.
     
 0.531
DM40_2632
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.515
DM40_3582
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
     0.508
DM40_2323
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
     0.485
DM40_3934
Hypothetical protein; Domain of unknown function family protein.
  
     0.480
DM40_2631
Putative helix-turn-helix, type 11.
  
     0.463
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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