STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2930ftsX-like permease family protein. (870 aa)    
Predicted Functional Partners:
DM40_2519
GDSL-like Lipase/Acylhydrolase family protein.
 
 
   0.935
DM40_2518
ABC transporter family protein.
 
 
 
 0.885
DM40_2931
Hypothetical protein.
       0.860
yjbI
Bacterial-like globin family protein.
 
     0.784
DM40_1043
GDSL-like Lipase/Acylhydrolase family protein.
 
 
   0.720
DM40_2927
Hypothetical protein.
       0.498
DM40_5044
GDSL-like Lipase/Acylhydrolase family protein.
   
   0.490
sugE
Quaternary ammonium compound-resistance protein sugE.
       0.486
lolD
Liporeleasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
  
 0.480
DM40_1015
ABC transporter family protein.
  
  
 0.460
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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