STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_2961O-Antigen ligase family protein. (446 aa)    
Predicted Functional Partners:
rfaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II.
  
 
 0.922
rfaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
  
 
 0.920
DM40_1567
Glycosyl transferases group 1 family protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.920
rfaC-2
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
  
 
 0.920
DM40_2965
Glycosyltransferase 9 family protein.
  
 
 0.920
DM40_2960
Hypothetical protein.
  
  
 0.798
DM40_3806
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.736
DM40_3835
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.736
DM40_4242
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.736
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
     
 0.708
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.