Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM40_3004Ring hydroxylating alpha subunit family protein. (413 aa)    
Predicted Functional Partners:
DM40_5022
2Fe-2S iron-sulfur cluster binding domain protein.
 
 0.994
DM40_3005
Electron transfer flavodomain protein.
 
 
  0.993
DM40_3007
4Fe-4S dicluster domain protein.
 
 
 0.993
stcD
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
 
 0.989
DM40_3006
Electron transfer flavodomain protein.
 
 
  0.977
DM40_3009
V4R domain protein.
 
    0.955
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
     
  0.900
DM40_3559
Aldehyde dehydrogenase family protein.
     
  0.900
soxD
Subunit delta of sarcosine oxidase.
 
    0.869
DM40_3052
Sarcosine oxidase, gamma subunit.
 
    0.855
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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