STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3010Membrane dipeptidase family protein. (323 aa)    
Predicted Functional Partners:
DM40_3009
V4R domain protein.
 
  
 0.948
DM40_589
Peptidase C26 family protein.
      0.895
DM40_3005
Electron transfer flavodomain protein.
 
    0.874
DM40_4175
malate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.848
DM40_5589
malate/L-lactate dehydrogenase family protein.
  
    0.848
DM40_3007
4Fe-4S dicluster domain protein.
 
    0.827
stcD
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
    0.801
DM40_3004
Ring hydroxylating alpha subunit family protein.
 
    0.708
DM40_3052
Sarcosine oxidase, gamma subunit.
 
    0.698
soxD
Subunit delta of sarcosine oxidase.
 
    0.681
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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