STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3034ABC-2 type transporter family protein. (256 aa)    
Predicted Functional Partners:
DM40_3033
ABC transporter family protein.
  
 0.975
DM40_1137
ABC transporter family protein.
  
 0.856
nodI
Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
  
 0.570
DM40_2230
nodJ: ABC-2 type transporter, NodJ family protein.
  
  
 
0.518
DM40_4538
CAAX protease self-immunity family protein.
   
  
 0.500
DM40_3035
Metallo-beta-lactamase superfamily protein.
  
    0.491
DM40_1550
ABC transporter family protein.
  
  
 0.432
ccmA-5
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
  
 0.432
DM40_1208
Nitroreductase family protein.
  
    0.431
bluB
bluB: 5,6-dimethylbenzimidazole synthase.
  
    0.431
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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