STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3045Substrate binding domain of ABC-type glycine betaine transport system family protein. (307 aa)    
Predicted Functional Partners:
DM40_3046
Binding--dependent transport system inner membrane component family protein.
 
 0.999
DM40_3047
ABC transporter family protein.
 
 0.999
DM40_3048
Binding--dependent transport system inner membrane component family protein.
 
 0.999
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
 
  
 0.904
arr
Rifampin ADP-ribosyl transferase.
       0.651
DM40_3044
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein.
       0.519
DM40_1602
Hypothetical protein.
  
    0.501
DM40_2158
PXPV repeat family protein.
  
    0.501
DM40_2706
Hypothetical protein.
  
    0.501
DM40_3238
Putative membrane protein.
  
    0.501
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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