STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3057Helix-turn-helix domain protein. (357 aa)    
Predicted Functional Partners:
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
     0.749
DM40_3052
Sarcosine oxidase, gamma subunit.
 
    0.744
soxD
Subunit delta of sarcosine oxidase.
 
     0.737
DM40_5680
Helix-turn-helix domain protein.
  
     0.732
DM40_5754
Helix-turn-helix domain protein.
  
     0.720
DM40_3805
Helix-turn-helix domain protein.
  
     0.716
soxB_4
soxB: sarcosine oxidase, beta subunit.
 
     0.713
DM40_5029
Helix-turn-helix domain protein.
  
   0.685
DM40_3056
Sda_mono: L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
     0.557
DM40_3005
Electron transfer flavodomain protein.
  
     0.545
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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