STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hgd_33-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein. (296 aa)    
Predicted Functional Partners:
DM40_3060
Hypothetical protein.
 
  
 0.890
DM40_3061
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
 
    0.836
fba
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
    0.668
DM40_3063
Xylose isomerase-like TIM barrel family protein; Belongs to the hyi family.
 
 0.648
DM40_3058
Bacterial regulatory s, gntR family protein.
 
     0.641
mmsA-2
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
 
  0.625
mmsA-4
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
 
  0.625
DM40_2190
enoyl-CoA hydratase/isomerase family protein.
 
 
 
  0.607
uca
Urea_carbox: urea carboxylase.
  
 
  0.574
mmsA
MMSDH: methylmalonate-semialdehyde dehydrogenase.
   
 
  0.571
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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