STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choXABC_choline_bnd: choline ABC transporter, periplasmic binding family protein. (315 aa)    
Predicted Functional Partners:
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
 0.998
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
 
 0.992
DM40_5021
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
  
 
0.874
DM40_5403
Substrate binding domain of ABC-type glycine betaine transport system family protein.
  
  
  0.873
choX-2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
  
  
 
0.832
DM40_794
Hypothetical protein.
  
 
 0.676
DM40_5378
cheR methyltransferase, all-alpha domain protein.
    
  0.664
DM40_3073
Helix-turn-helix domain protein.
 
     0.626
betI
Transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
  
     0.559
DM40_3046
Binding--dependent transport system inner membrane component family protein.
 
 
 0.503
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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