STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3097Bacterial regulatory s, tetR family protein. (240 aa)    
Predicted Functional Partners:
DM40_3096
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
       0.539
DM40_3095
Carboxyl transferase domain protein.
       0.483
DM40_3850
Putative metal-dependent hydrolase family protein.
  
     0.472
DM40_4649
Putative metal-dependent hydrolase family protein.
  
     0.464
DM40_3094
enoyl-CoA hydratase/isomerase family protein.
       0.440
DM40_3093
D-ala D-ala ligase family protein.
   
   0.429
DM40_4643
merR HTH regulatory family protein.
  
     0.425
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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