STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3118Aldehyde dehydrogenase family protein. (503 aa)    
Predicted Functional Partners:
gabT
GABAtrnsam: 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.959
DM40_5771
adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase.
  
 0.951
speB
Agmatinase: agmatinase; Belongs to the arginase family.
   
 
  0.948
mmsB
HIBADH: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
   
 
  0.946
DM40_4462
Zinc-binding dehydrogenase family protein.
   
 
  0.946
DM40_705
Zinc-binding dehydrogenase family protein.
   
 
  0.946
DM40_2527
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
   
 
  0.945
DM40_4168
ygfH_subfam: succinate CoA transferase family protein.
   
 
  0.945
DM40_4990
Gamma-butyrobetaine dioxygenase.
   
  0.913
ackA
ackA: acetate kinase.
  
 
 0.897
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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