STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3144Putative HD phosphohydrolase. (183 aa)    
Predicted Functional Partners:
phnA
hydr_PhnA: phosphonoacetate hydrolase.
    0.965
phnY
phnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.806
phnV
phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.
       0.789
phnU
phnU: 2-aminoethylphosphonate ABC transporter, permease protein.
       0.789
phnT
phnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; Belongs to the ABC transporter superfamily.
       0.789
DM40_4990
Gamma-butyrobetaine dioxygenase.
      0.739
DM40_3344
phytanoyl-CoA dioxygenase family protein.
 
  
  0.693
phnS
phnS: 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein.
       0.670
phnW
2-aminoethylphosphonate--pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
     0.670
DM40_682
phytanoyl-CoA dioxygenase family protein.
 
  
  0.665
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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