STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
garDgalactar-dH20: galactarate dehydratase. (517 aa)    
Predicted Functional Partners:
gudD
Glucar-dehydr: glucarate dehydratase.
 
 
 0.986
DM40_1010
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.980
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.978
DM40_717
hpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.942
DM40_1011
2A0114: D-galactonate transporter family protein.
 
  
 0.652
DM40_3152
Major Facilitator Superfamily protein.
 
  
 0.589
DM40_1323
Thiamine monophosphate synthase/TENI family protein.
 
  
 0.580
DM40_4546
Putative glucarate transporter.
  
     0.558
DM40_219
Mannitol dehydrogenase Rossmann domain protein.
 
  
 0.542
exuT
Hexuronate transporter.
 
  
 0.511
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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