STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DM40_3175FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family protein. (472 aa)    
Predicted Functional Partners:
DM40_3171
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
     0.892
DM40_3176
NLPA lipofamily protein; Belongs to the nlpA lipoprotein family.
       0.803
msuE
FMN_reduc_MsuE: FMN reductase.
 
 
 0.778
DM40_4609
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
     0.762
DM40_3173
Binding--dependent transport system inner membrane component family protein.
      0.761
metN-2
ABC transporter family protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.754
DM40_4608
sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family.
  
     0.749
DM40_3172
Hypothetical protein.
       0.574
DM40_3177
Hypothetical protein.
       0.535
DM40_4095
NMT1-like family protein.
 
  
 0.513
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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