STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3181Hypothetical protein. (109 aa)    
Predicted Functional Partners:
DM40_2079
Hypothetical protein.
  
     0.728
DM40_375
Phasin: phasin family domain protein.
  
     0.724
DM40_3179
His Kinase A domain protein.
       0.697
DM40_3180
AAA domain family protein.
       0.697
gshA
gshA_ferroox: glutamate--cysteine ligase.
  
     0.685
DM40_2986
Hypothetical protein.
  
     0.684
sdhD
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.671
sdhD-2
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.671
DM40_510
Hypothetical protein.
  
     0.612
DM40_5508
Hypothetical protein; OMP85_target: outer membrane insertion C-terminal signal domain protein.
  
     0.596
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.