STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM40_31842A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein. (1048 aa)    
Predicted Functional Partners:
DM40_3185
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.959
DM40_3183
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.950
DM40_2256
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.839
mexA
Multidrug resistance protein mexA.
 
 0.837
DM40_1860
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.811
DM40_3907
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.743
DM40_4304
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
   0.733
DM40_5099
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.717
DM40_5859
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
   0.710
DM40_5381
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 
 0.709
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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