Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM40_3220integ_memb_HG: integral membrane domain protein. (102 aa)    
Predicted Functional Partners:
DM40_3219
Hypothetical protein.
 
     0.919
DM40_4822
Bacterial regulatory s, luxR family protein.
  
     0.630
DM40_3221
Helix-turn-helix domain protein.
 
     0.610
DM40_129
Hypothetical protein.
  
     0.592
lifO
Lipase chaperone; May be involved in the folding of the extracellular lipase during its passage through the periplasm; Belongs to the lipase chaperone family.
  
     0.548
DM40_3257
PAP2 superfamily protein.
  
     0.545
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.523
DM40_2502
Putative lipoprotein.
  
     0.512
DM40_4440
lysM domain protein.
  
     0.473
DM40_5812
Hypothetical protein.
  
     0.444
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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