STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3233fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (320 aa)    
Predicted Functional Partners:
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 0.998
hmuT
Hemin-binding periplasmic protein hmuT.
 
 0.992
DM40_91
ABC transporter family protein.
 
 
 0.942
DM40_2268
ABC transporter family protein.
 
 
 0.939
DM40_87
Periplasmic binding family protein.
 
 
 0.929
DM40_3231
Hemin-degrading HemS.ChuX domain protein.
 
  
 0.795
DM40_232
ABC transporter family protein.
  
 
 0.751
DM40_2271
Periplasmic binding family protein.
 
  
 0.556
DM40_3230
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
 
  
 0.471
DM40_1668
tonB dependent receptor family protein.
  
  
 0.466
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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