DM40_3241 protein (Burkholderia cenocepacia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DM40_3241

Hit-like protein involved in cell-cycle regulation. (139 aa)

Predicted Functional Partners:

glnA

0.656

DM40_2809

0.611

DM40_4859

0.611

DM40_590

0.611

flgK

0.464

fliG

0.464

fliM

0.464

DM40_3242

0.445

pcbd1

0.415

lysS

0.404

Your Current Organism:

Burkholderia cenocepacia

NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM40_2809	DM40_3241	DM40_2809	DM40_3241	Glutamine synthetase, catalytic domain protein.	Hit-like protein involved in cell-cycle regulation.	0.611
DM40_2809	DM40_4859	DM40_2809	DM40_4859	Glutamine synthetase, catalytic domain protein.	Glutamine synthetase, catalytic domain protein.	0.841
DM40_2809	DM40_590	DM40_2809	DM40_590	Glutamine synthetase, catalytic domain protein.	Glutamine synthetase, catalytic domain protein.	0.801
DM40_2809	glnA	DM40_2809	DM40_2789	Glutamine synthetase, catalytic domain protein.	glnA: glutamine synthetase, type I.	0.833
DM40_3241	DM40_2809	DM40_3241	DM40_2809	Hit-like protein involved in cell-cycle regulation.	Glutamine synthetase, catalytic domain protein.	0.611
DM40_3241	DM40_3242	DM40_3241	DM40_3242	Hit-like protein involved in cell-cycle regulation.	Beta-lactamase family protein.	0.445
DM40_3241	DM40_4859	DM40_3241	DM40_4859	Hit-like protein involved in cell-cycle regulation.	Glutamine synthetase, catalytic domain protein.	0.611
DM40_3241	DM40_590	DM40_3241	DM40_590	Hit-like protein involved in cell-cycle regulation.	Glutamine synthetase, catalytic domain protein.	0.611
DM40_3241	flgK	DM40_3241	DM40_612	Hit-like protein involved in cell-cycle regulation.	flgK_ends: flagellar hook-associated protein FlgK.	0.464
DM40_3241	fliG	DM40_3241	DM40_669	Hit-like protein involved in cell-cycle regulation.	fliG: flagellar motor switch protein FliG.	0.464
DM40_3241	fliM	DM40_3241	DM40_820	Hit-like protein involved in cell-cycle regulation.	fliM_switch: flagellar motor switch protein FliM.	0.464
DM40_3241	glnA	DM40_3241	DM40_2789	Hit-like protein involved in cell-cycle regulation.	glnA: glutamine synthetase, type I.	0.656
DM40_3241	lysS	DM40_3241	DM40_2758	Hit-like protein involved in cell-cycle regulation.	lysS_bact: lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.404
DM40_3241	pcbd1	DM40_3241	DM40_854	Hit-like protein involved in cell-cycle regulation.	Pterin-4-alpha-carbinolamine dehydratase.	0.415
DM40_3242	DM40_3241	DM40_3242	DM40_3241	Beta-lactamase family protein.	Hit-like protein involved in cell-cycle regulation.	0.445
DM40_4859	DM40_2809	DM40_4859	DM40_2809	Glutamine synthetase, catalytic domain protein.	Glutamine synthetase, catalytic domain protein.	0.841
DM40_4859	DM40_3241	DM40_4859	DM40_3241	Glutamine synthetase, catalytic domain protein.	Hit-like protein involved in cell-cycle regulation.	0.611
DM40_4859	DM40_590	DM40_4859	DM40_590	Glutamine synthetase, catalytic domain protein.	Glutamine synthetase, catalytic domain protein.	0.843
DM40_4859	glnA	DM40_4859	DM40_2789	Glutamine synthetase, catalytic domain protein.	glnA: glutamine synthetase, type I.	0.843
DM40_590	DM40_2809	DM40_590	DM40_2809	Glutamine synthetase, catalytic domain protein.	Glutamine synthetase, catalytic domain protein.	0.801

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About