STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3263Bacterial Cytochrome Ubiquinol Oxidase family protein. (470 aa)    
Predicted Functional Partners:
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 0.989
cydA
Cytochrome d ubiquinol oxidase subunit 1.
  
  
 
0.969
cydB-3
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.967
cydB-4
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 
 0.967
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 
 0.959
DM40_5250
Bacterial Cytochrome Ubiquinol Oxidase family protein.
  
  
 
0.942
cydX
cyd_oper_ybgT: cyd operon protein YbgT.
  
 
 0.777
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.689
DM40_3265
Hypothetical protein.
       0.679
DM40_2336
cyd_oper_ybgT: cyd operon protein YbgT.
  
 
 0.656
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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