Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3275Hypothetical protein. (1277 aa)    
Predicted Functional Partners:
flgE
flgEFG_subfam: flagellar hook-basal body family protein.
   
 
 0.727
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.666
DM40_2647
Outer membrane family protein; Belongs to the skp family.
 
 
 0.594
DM40_3276
Hypothetical protein.
 
     0.583
DM40_1307
MJ0042 family finger-like domain protein; MJ0042_CXXC: MJ0042 family finger-like domain protein.
  
     0.538
DM40_2416
endonuclease/Exonuclease/phosphatase family protein.
  
  
 0.535
flgF
flgF: flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
   
   0.523
DM40_2401
Hypothetical protein.
  
     0.509
DM40_1839
smpA / OmlA family protein.
  
  
 0.492
DM40_5643
Hypothetical protein.
   
   0.484
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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