STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3278ATPase-IB1_Cu: copper-translocating P-type ATPase. (940 aa)    
Predicted Functional Partners:
DM40_70
Copper/zinc superoxide dismutase family protein.
   
 0.999
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
 
0.937
DM40_586
Heavy-metal-associated domain protein.
 
 
 0.937
DM40_900
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
0.933
DM40_1420
Ferritin-like domain protein; Belongs to the Dps family.
 
  
 0.761
DM40_177
Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
 
  
 0.744
DM40_3475
Metal-sensitive transcriptional repressor family protein.
  
  
 0.731
frmR
Transcriptional repressor frmR.
  
  
 0.731
DM40_157
Multicopper oxidase family protein.
  
 
 0.710
ppa
Inorganic pyrophosphatase family protein; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
  
 
 0.637
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.