STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppCOligopeptide transport system permease protein oppC. (300 aa)    
Predicted Functional Partners:
oppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.999
oppB
Binding--dependent transport system inner membrane component family protein.
 
 0.999
oppA3
Periplasmic oligopeptide-binding protein.
 
 
 0.999
DM40_3309
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.997
dppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.977
DM40_4592
ABC transporter family protein.
 
 0.955
DM40_646
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 0.943
DM40_4593
ABC transporter family protein.
 
 0.927
nikE-2
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
 
 0.917
DM40_4200
Binding--dependent transport system inner membrane component family protein.
 
 0.903
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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