STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpnHRadical SAM superfamily protein. (386 aa)    
Predicted Functional Partners:
hpnJ
Radical SAM superfamily protein.
 
  
 0.892
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
   
 0.870
shc
Hopene_cyclase: squalene-hopene cyclase.
 
   
 0.870
DM40_3393
MMPL family protein.
 
   
 0.818
hpnD-2
hpnD: squalene synthase HpnD.
 
   
 0.814
DM40_3322
Glycosyl transferase 2 family protein.
 
   
 0.809
DM40_3395
Phosphorylase superfamily protein.
 
   
 0.794
DM40_3320
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.773
DM40_3397
FAD binding domain protein.
 
    0.737
DM40_4165
hpnL: membrane family protein.
 
     0.733
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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