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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3362SMP-30/Gluconolaconase/LRE-like region family protein. (300 aa)    
Predicted Functional Partners:
DM40_3366
Oxidoreductase, NAD-binding Rossmann fold family protein.
 
 
 0.899
DM40_3369
Dehydratase family protein; Belongs to the IlvD/Edd family.
 
  
  0.831
DM40_1328
Short chain dehydrogenase family protein.
 
 
  0.698
DM40_4970
NHL repeat family protein.
  
  
  0.671
araH-2
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.662
DM40_3365
Periplasmic binding s and sugar binding domain of LacI family protein.
 
  
  0.640
DM40_1322
2-keto-3-deoxy-galactonokinase family protein.
 
   
 0.626
DM40_5672
PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family protein.
     
 0.610
DM40_1361
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
 
  
 0.603
ccmA-4
Heme ABC exporter, ATP-binding protein CcmA; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
    
  0.574
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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