STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3375Beta-galactosidase. (663 aa)    
Predicted Functional Partners:
DM40_5777
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
 
 
 0.924
DM40_5275
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
  
 
 0.914
DM40_1329
Aldose 1-epimerase family protein.
  
 
 0.909
DM40_3376
Bacterial extracellular solute-binding family protein.
 
   
 0.907
DM40_3374
ABC transporter family protein; Belongs to the ABC transporter superfamily.
     
 0.774
DM40_3378
Binding--dependent transport system inner membrane component family protein.
 
    0.726
DM40_3377
Binding--dependent transport system inner membrane component family protein.
 
    0.710
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.708
DM40_4235
Putative beta-mannosidase.
 
 
 
 0.624
DM40_4194
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.608
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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