STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soj_1cobQ/CobB/MinD/ParA nucleotide binding domain protein. (220 aa)    
Predicted Functional Partners:
DM40_3411
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 0.980
DM40_873
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.821
DM40_5458
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.781
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
 
 0.741
DM40_779
parB_part: ParB/RepB/Spo0J family partition domain protein.
 
 
 0.688
DM40_2584
Putative pyridoxal phosphate biosynthetic protein PdxJ.
  
 
 0.638
DM40_3409
Hypothetical protein.
       0.610
DM40_778
parB-like nuclease domain protein.
  
 
 0.595
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.581
DM40_4463
tonB dependent receptor family protein.
    
   0.543
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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