STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3426Patatin-like phospholipase family protein. (405 aa)    
Predicted Functional Partners:
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
   
 0.849
DM40_3427
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
 
 
   0.778
DM40_3425
Putative signal peptide transmembrane protein.
       0.635
DM40_2857
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
 
 
   0.576
DM40_4418
Poly-beta-hydroxybutyrate polymerase family protein.
 
   
 0.430
DM40_4584
Bacterial extracellular solute-binding s, 5 Middle family protein.
      
 0.403
DM40_4589
Bacterial extracellular solute-binding s, 5 Middle family protein.
      
 0.403
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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