STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobAPbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase. (410 aa)    
Predicted Functional Partners:
pcaH
Protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit.
 
  
 0.990
pcaG
Protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit.
 
  
 0.987
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
 
   
 0.838
pcaB
protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase.
 
   
 0.809
DM40_3155
Xylose isomerase-like TIM barrel family protein.
 
 
 0.768
catA-2
Catechol_proteo: catechol 1,2-dioxygenase.
 
  
 0.745
pnpC
pnpC.
 
  
 0.721
catA
Catechol_proteo: catechol 1,2-dioxygenase.
 
  
 0.682
DM40_4874
Cytochrome P450 family protein.
   
 0.681
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
 
 
 0.661
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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