STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3467Radical SAM superfamily protein. (394 aa)    
Predicted Functional Partners:
DM40_3795
cheR methyltransferase, SAM binding domain protein.
    
   0.883
DM40_5378
cheR methyltransferase, all-alpha domain protein.
    
   0.883
DM40_962
cheR methyltransferase, all-alpha domain protein.
    
   0.883
DM40_3468
ATP-grasp domain protein.
 
     0.707
DM40_3469
2OG-Fe dioxygenase family protein.
 
     0.648
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
    
 0.633
DM40_3470
Major Facilitator Superfamily protein.
       0.591
DM40_2714
Asp_kin_monofn: aspartate kinase, monofunctional class; Belongs to the aspartokinase family.
    
 0.570
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.512
ald
alaDH: alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.499
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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