Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_3492Histidine phosphatase super family protein. (224 aa)    
Predicted Functional Partners:
DM40_3493
Aminoglycoside phosphotransferase.
 
    0.887
DM40_3494
Short chain dehydrogenase family protein.
 
 
   0.772
DM40_3495
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 
   0.693
cobJ
cobJ_cbiH: precorrin-3B C17-methyltransferase.
  
  
 0.569
DM40_3772
Helix-turn-helix domain protein.
  
     0.535
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.535
DM40_3496
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
     0.530
DM40_5526
Nitroreductase family protein.
 
   
 0.495
DM40_5503
Nitroreductase family protein.
 
   
 0.494
DM40_1121
Glutamine amidotransferases class-II family protein.
     
 0.490
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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