STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_351Histidine triad (HIT) protein. (147 aa)    
Predicted Functional Partners:
DM40_350
Hypothetical protein.
       0.859
DM40_352
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
 
 
   0.772
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase family protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
   
   0.663
DM40_348
Tim44-like domain protein.
 
     0.645
glnA
glnA: glutamine synthetase, type I.
 
 
   0.574
DM40_347
SCP-2 sterol transfer family protein.
 
     0.571
DM40_2809
Glutamine synthetase, catalytic domain protein.
   
   0.488
DM40_4859
Glutamine synthetase, catalytic domain protein.
   
   0.488
DM40_590
Glutamine synthetase, catalytic domain protein.
   
   0.488
flgK
flgK_ends: flagellar hook-associated protein FlgK.
    
   0.463
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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