STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3581vgr_GE: Rhs element Vgr family protein. (924 aa)    
Predicted Functional Partners:
DM40_1192
Hypothetical protein.
 
 
 0.907
EvpA
Hypothetical protein.
 
  
 0.906
DM40_4770
Hypothetical protein.
 
  
 0.899
DM40_3578
PAAR motif family protein.
 
   
 0.875
hcp-1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.874
tssC
Hypothetical protein.
 
  
 0.869
tssA
impA-related N-terminal family protein.
 
  
 0.864
DM40_4769
Hypothetical protein.
 
  
 0.863
tssJ
Type VI secretion lipofamily protein.
 
  
 0.862
DM40_1197
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.857
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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