STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3590Helix-turn-helix family protein. (330 aa)    
Predicted Functional Partners:
ptsP
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
   
 0.945
DM40_1121
Glutamine amidotransferases class-II family protein.
    
 
 0.923
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
    
 0.663
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
   0.570
ptsH
PTS_HPr_: phosphocarrier, HPr family protein.
 
 
 
 0.553
treS
treS_nterm: trehalose synthase.
  
 
 0.528
DM40_3591
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
       0.495
DM40_4783
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family.
 
 
 
 0.479
DM40_5095
PTS HPr component phosphorylation site family protein.
   
 
 0.479
DM40_236
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
 
 
 
 0.428
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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