STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3592Hypothetical protein. (106 aa)    
Predicted Functional Partners:
DM40_897
Transcriptional regulator PadR-like family protein.
  
     0.482
egtD
egtD_ergothio: dimethylhistidine N-methyltransferase.
   
    0.479
DM40_3593
merR regulatory family protein.
       0.458
DM40_5490
Metallo-beta-lactamase superfamily protein.
  
     0.446
DM40_3162
Hypothetical protein.
  
     0.429
DM40_3169
Helix-turn-helix family protein.
  
     0.429
DM40_4659
Ribbon-helix-helix, copG family protein.
  
     0.419
DM40_4957
Hypothetical protein.
  
     0.412
DM40_4461
BNR repeat-like domain protein.
  
     0.402
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.