STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3610Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein. (3061 aa)    
Predicted Functional Partners:
DM40_4619
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.819
DM40_3519
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.814
DM40_4716
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.811
DM40_3724
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 
 0.789
DM40_3077
Hypothetical protein.
  
     0.701
DM40_416
Lipid A 3-O-deacylase family protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
  
     0.636
DM40_4822
Bacterial regulatory s, luxR family protein.
  
     0.626
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
     0.621
DM40_830
Type II secretion system (T2SS), M family protein.
  
     0.616
DM40_530
X-Pro dipeptidyl-peptidase family protein.
  
     0.612
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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