STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3634Sulfatase-modifying factor enzyme 1 family protein. (349 aa)    
Predicted Functional Partners:
atsA
Arylsulfatase.
 
   0.977
DM40_3635
NLPA lipofamily protein.
       0.799
DM40_3636
Putative zinc-/iron-chelating domain protein.
       0.799
betC
Chol_sulfatase: choline-sulfatase.
 
   0.775
egtD
egtD_ergothio: dimethylhistidine N-methyltransferase.
  
 
 0.731
DM40_1523
Putative membrane protein.
  
   0.711
egtB
egtB_TIGR03440: ergothioneine biosynthesis EgtB family protein.
  
  
  0.551
DM40_1372
Glutamine amidotransferases class-II family protein.
  
 
 0.531
DM40_1457
Glutamine amidotransferases class-II family protein.
  
 
 0.531
DM40_3894
Phosphotransferase enzyme family protein.
  
 
 0.530
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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