STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3647Phosphoenolpyruvate phosphomutase family protein. (255 aa)    
Predicted Functional Partners:
DM40_3648
Saccharopine dehydrogenase family protein.
       0.781
DM40_3289
cit_synth_II: 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family.
 
 
 0.765
DM40_170
merR regulatory family protein.
  
 
 0.637
gltA
cit_synth_I: citrate (Si)-synthase; Belongs to the citrate synthase family.
  
 
 0.637
prpD
prpD: 2-methylcitrate dehydratase.
 
  
 0.619
DM40_3649
Bacterial regulatory s, tetR family protein.
 
     0.610
DM40_5516
mmgE/PrpD family protein.
 
  
 0.606
DM40_5517
mmgE/PrpD family protein.
 
  
 0.591
DM40_5511
mmgE/PrpD family protein.
 
  
 0.573
DM40_5560
mmgE/PrpD family protein.
 
  
 0.572
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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