Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DM40_3648Saccharopine dehydrogenase family protein. (351 aa)    
Predicted Functional Partners:
DM40_3647
Phosphoenolpyruvate phosphomutase family protein.
       0.781
DM40_897
Transcriptional regulator PadR-like family protein.
  
     0.691
DM40_1362
Bacterial regulatory s, tetR family protein.
  
     0.644
DM40_4706
Permease for cytosine/purine, uracil, thiamine, allantoin family protein.
  
     0.630
DM40_3043
/NonD: hydrolase CocE/NonD family protein.
  
     0.614
DM40_4461
BNR repeat-like domain protein.
  
     0.592
DM40_4931
Short chain dehydrogenase family protein.
  
   
 0.566
DM40_3649
Bacterial regulatory s, tetR family protein.
       0.537
DM40_1793
Glutaredoxin family protein.
  
 
   0.532
DM40_3708
Bacterial regulatory s, tetR family protein.
  
     0.500
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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