STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3712tonB-siderophor: TonB-dependent siderophore receptor family protein. (744 aa)    
Predicted Functional Partners:
pnuC
NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC family protein.
 
     0.737
DM40_4463
tonB dependent receptor family protein.
  
   
 0.737
DM40_3714
Phosphotransferase enzyme family protein.
 
     0.707
DM40_4017
Helix-turn-helix domain protein.
  
   
 0.691
tagF
Hypothetical protein.
  
     0.664
DM40_2395
Hypothetical protein.
 
 
 0.636
DM40_3069
snoaL-like domain protein.
  
     0.597
DM40_4779
2OG-Fe(II) oxygenase superfamily protein.
 
    0.568
tolA
tolA_full: protein TolA.
  
 
 0.563
DM40_1646
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
 
 0.563
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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