STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3727Adhesin HecA family domain protein. (345 aa)    
Predicted Functional Partners:
DM40_3724
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
 0.832
DM40_3723
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
 
  
  0.789
DM40_5087
Helix-turn-helix family protein.
  
     0.741
DM40_4440
lysM domain protein.
  
 
  0.702
DM40_5671
Cytochrome c family protein.
  
     0.669
DM40_5118
Putative membrane protein.
  
     0.637
epaO-2
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
    0.627
DM40_4092
Tad-like Flp pilus-assembly family protein.
  
     0.624
DM40_5812
Hypothetical protein.
  
     0.614
DM40_735
Patatin-like phospholipase family protein.
  
     0.608
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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