STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_376cobQ/CobB/MinD/ParA nucleotide binding domain protein. (254 aa)    
Predicted Functional Partners:
DM40_873
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.860
DM40_779
parB_part: ParB/RepB/Spo0J family partition domain protein.
 
 
 0.697
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
 
 0.687
DM40_5458
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.660
DM40_2584
Putative pyridoxal phosphate biosynthetic protein PdxJ.
  
 
 0.639
DM40_3411
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.614
DM40_1428
ATP:cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
  0.573
DM40_5464
proQ/FINO family protein.
   
    0.551
DM40_1835
Glycosyl transferase 2 family protein.
  
 
 0.535
bcsA
celA: cellulose synthase catalytic subunit.
  
 
 0.535
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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