Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_3763TIGR02594 family protein. (136 aa)    
Predicted Functional Partners:
DM40_1371
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
     0.665
DM40_4743
Hypothetical protein.
  
     0.544
DM40_4887
Autotrans_barl: outer membrane autotransporter barrel domain protein.
 
  
 0.527
DM40_4904
anti-sigma-K factor rskA family protein.
  
     0.504
DM40_4446
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
  
    0.488
DM40_4253
NAD dependent epimerase/dehydratase family protein.
  
     0.487
DM40_3230
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
  
     0.486
DM40_3528
Branched-chain amino acid transport family protein.
  
     0.470
glmS-2
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.463
DM40_5735
gtrA-like family protein.
  
     0.462
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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