STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3771Hypothetical protein. (149 aa)    
Predicted Functional Partners:
DM40_3770
Hypothetical protein.
 
 
 0.999
DM40_4354
Proline racemase; Belongs to the proline racemase family.
 
 
 0.620
DM40_4178
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
 
 0.606
DM40_3769
marR family protein.
       0.578
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.509
DM40_159
Monomer_idh: isocitrate dehydrogenase, NADP-dependent; Belongs to the monomeric-type IDH family.
     
  0.499
icd
Prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent.
     
  0.499
DM40_170
merR regulatory family protein.
     
  0.499
aceA
Isocit_lyase: isocitrate lyase.
     
  0.499
gltA
cit_synth_I: citrate (Si)-synthase; Belongs to the citrate synthase family.
     
  0.499
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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