STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
catACatechol_proteo: catechol 1,2-dioxygenase. (300 aa)    
Predicted Functional Partners:
catB
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.997
catB-2
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.992
benD
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.978
catC
Muco_delta: muconolactone delta-isomerase.
 
  
 0.976
catC-2
Muco_delta: muconolactone delta-isomerase.
 
  
 0.912
catA-2
Catechol_proteo: catechol 1,2-dioxygenase.
  
  
 
0.905
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
 
  
 0.843
DM40_5133
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
 0.838
cbdA
2-halobenzoate 1,2-dioxygenase large subunit.
 
  
 0.793
DM40_3780
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.787
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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