STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3801ABC transporter family protein. (620 aa)    
Predicted Functional Partners:
DM40_641
ABC transporter family protein.
 
 
 
0.884
DM40_5069
type_I_sec_LssB: type I secretion system ATPase family protein.
   
 
0.870
DM40_5229
ABC transporter family protein.
  
 
0.844
DM40_331
ABC transporter family protein.
  
 
0.835
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.748
ccmA-5
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
0.710
DM40_812
ABC transporter family protein.
 
0.681
DM40_5374
FAD binding domain of DNA photolyase family protein.
  
 
 
 0.674
DM40_3033
ABC transporter family protein.
 
0.665
DM40_1137
ABC transporter family protein.
  
0.661
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.