STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3840Glycosyl transferase 2 family protein. (319 aa)    
Predicted Functional Partners:
DM40_3843
Glycosyl transferases group 1 family protein.
  
  0.951
DM40_1689
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
 
 0.896
DM40_3842
O-antigen ligase like membrane family protein.
 
     0.887
DM40_3844
Glycosyl transferases group 1 family protein.
 
  
  0.882
DM40_2004
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
 
 0.862
DM40_3972
NHL repeat family protein.
  
     0.770
DM40_3102
NHL repeat family protein.
  
     0.753
pgaA
PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA.
  
 
 0.750
DM40_3480
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.749
DM40_3839
Eps_fam: capsular exopolysaccharide family domain protein.
 
  
 0.725
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.