STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_3854RES domain protein. (233 aa)    
Predicted Functional Partners:
DM40_3853
Hypothetical protein.
 
 
 0.996
DM40_5448
Hypothetical protein.
 
 
 0.977
DM40_1563
Polysaccharide biosynthesis family protein.
  
     0.515
DM40_2955
PRC-barrel domain protein.
  
     0.509
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.507
DM40_3852
3A0103s03R: lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family.
       0.473
DM40_4637
Part of AAA domain protein.
  
     0.473
DM40_2604
Tetratricopeptide repeat family protein.
  
     0.465
DM40_662
pepSY-associated TM helix family protein.
  
     0.449
DM40_5758
Nuclease-related domain protein.
  
     0.431
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.